publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

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    Thermal Adaptation of Cytosolic Malate Dehydrogenase Revealed by Deep Learning and Coevolutionary Analysis
    Divyanshu Shukla , Jonathan Martin, Faruck Morcos , and 1 more author
    J. Chem. Theory Comput., Mar 2025
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2024

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    Lipid discovery enabled by sequence statistics and machine learning
    Priya M. Christensen , Jonathan Martin, Aparna Uppuluri , and 5 more authors
    eLife, Feb 2024
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    Machine learning in biological physics: From biomolecular prediction to design
    Jonathan Martin, Marcos Lequerica Mateos , José N. Onuchic , and 2 more authors
    Proc. Natl. Acad. Sci. U.S.A., Jul 2024
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    The physical and evolutionary energy landscapes of devolved protein sequences corresponding to pseudogenes
    Hana Jaafari , Carlos Bueno , Nicholas P. Schafer , and 3 more authors
    Proc. Natl. Acad. Sci. U.S.A., May 2024
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  4. mimick.png
    Designing proteins: Mimicking natural protein sequence heterogeneity
    Marcos Lequerica-Mateos , Jonathan Martin, José N. Onuchic , and 2 more authors
    J. Chem. Phys., Nov 2024
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2023

  1. lgl.png
    Latent generative landscapes as maps of functional diversity in protein sequence space
    Cheyenne Ziegler , Jonathan Martin, Claude Sinner , and 1 more author
    Nat. Commun., Apr 2023
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